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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20396391_20399652_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20396391 - 20399652
Intron Length:
3262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CAGCCTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
68.3
0.65
1.3
74.37
42.5

Associated Gene:

Gene:
ARHGAP5
Ensembl Gene ID:
ENSAPLG00000015365
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016014
20364795 - 20405362
40568