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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20399760_20405248_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20399760 - 20405248
Intron Length:
5489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATTTTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
61.9
0.45
1.5
78.71
37

Associated Gene:

Gene:
ARHGAP5
Ensembl Gene ID:
ENSAPLG00000015365
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016014
20364795 - 20405362
40568