About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20436596_20440683_F

Intron Information:

Intron Rank:
126764
Intron Class:
major
Intron Phase:
Intron Coordinates:
20436596 - 20440683
Intron Length:
4088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATCACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.8
0.76
0.8
82.3
34
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
57
0.3
1.8
76.03
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018307
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023741
20409230 - 20441165
31936