Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2045461_2046939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2045461 - 2046939

Intron Length:

1479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACGA

5'SS Class:

major

3'SS Sequence:

CTTTATTCCGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TTTTGCTTTATT

Flanking Amino Acid:

GYTGEGKKCEDIDECDNDFN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

77.6

0.62

0.8

73.5

31.1

Minor 5ss

30.7

-2.2

3.1

39.6

45.7

Minor BPS

65.1

0.56

2.1

87.87

37.8

Associated Gene:

Gene:

SCUBE2

Ensembl Gene ID:

ENSAPLG00000002698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030627

2043826 - 2060534

16709

ENSAPLT00000027922

2043826 - 2081423

37598

ENSAPLT00000002752

2044133 - 2081423

37291