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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2047066_2049994_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2047066 - 2049994

Intron Length:

2929

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCGTG

5'SS Class:

major

3'SS Sequence:

CTCTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACGAAG

U12 Branch Point Sequence:

AGGTACGAAGCT

Flanking Amino Acid:

MLAHDGHNCLDTDECTFNNG

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

67.1

44.6

Major BPS

45.2

-0.3

1.7

55.6

40.2

Major PPT

86.3

0.82

0.7

84.1

23.9

Minor 5ss

39.5

-1.2

3.4

47.2

48.2

Minor BPS

38.3

-0.8

2.4

55.95

45.9

Associated Gene:

Gene:

SCUBE2

Ensembl Gene ID:

ENSAPLG00000002698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030627

2043826 - 2060534

16709

ENSAPLT00000027922

2043826 - 2081423

37598

ENSAPLT00000002752

2044133 - 2081423

37291