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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20500566_20511872_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20500566 - 20511872
Intron Length:
11307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGGTTCTAAATA
Flanking Amino Acid:
VVISQPQSDAAKAYLKIAME
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
72.1
40.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.5
0.87
0.7
83.2
31.9
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
55.1
0.16
1.6
61.62
39.1

Associated Gene:

Gene:
NUBPL
Ensembl Gene ID:
ENSAPLG00000015416
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035441
20500503 - 20585065
84563
ENSAPLT00000029456
20500503 - 20588023
87521
ENSAPLT00000016082
20499964 - 20589023
89060
ENSAPLT00000046627
20500503 - 20528291
27789