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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20511956_20516902_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20511956 - 20516902
Intron Length:
4947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTGTCTTTAATA
Flanking Amino Acid:
LAKTLGLDVLGDIPLHVNIR
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.4
0.57
1
69.7
39.5
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
75.4
0.79
1.1
75.69
36.1

Associated Gene:

Gene:
NUBPL
Ensembl Gene ID:
ENSAPLG00000015416
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046627
20500503 - 20528291
27789
ENSAPLT00000035441
20500503 - 20585065
84563
ENSAPLT00000029456
20500503 - 20588023
87521
ENSAPLT00000016082
20499964 - 20589023
89060