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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20523021_20528233_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20523021 - 20528233
Intron Length:
5213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAAACTTCAATG
Flanking Amino Acid:
SEQLFRLLQEGAVIISTPQD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
50.7
-0.1
1.6
54.66
40.5

Associated Gene:

Gene:
NUBPL
Ensembl Gene ID:
ENSAPLG00000015416
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046627
20500503 - 20528291
27789