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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2055071_2055473_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2055071 - 2055473
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGCAAC
5'SS Class:
weak_major
3'SS Sequence:
ATTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGAGATCTAACA
Flanking Amino Acid:
ELSKNQRSCILTCNHGNGGC
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
59.7
39
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.7
0.69
0.8
74.1
36
Minor 5ss
48.3
-0.1
2.6
66
39.6
Minor BPS
46.8
-0.2
1.9
58.79
40.4

Associated Gene:

Gene:
SCUBE2
Ensembl Gene ID:
ENSAPLG00000002698
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030627
2043826 - 2060534
16709
ENSAPLT00000027922
2043826 - 2081423
37598
ENSAPLT00000002752
2044133 - 2081423
37291