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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20582226_20587875_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20582226 - 20587875
Intron Length:
5650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTTCCTTCTTT
Flanking Amino Acid:
KGGVGKSTAAVNIALALAAN
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
92.6
0.96
0.6
88.3
21.3
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
48.4
-0
3.6
87.57
38.6

Associated Gene:

Gene:
NUBPL
Ensembl Gene ID:
ENSAPLG00000015416
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016082
20499964 - 20589023
89060