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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20588024_20588939_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20588024 - 20588939
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTATTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAATAT
U12 Branch Point Sequence:
TCTTTTTTATTA
Flanking Amino Acid:
ACAASSSGSASSSSRDEVLQ
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
52.3
0.06
1.3
49.4
44.5
Major PPT
83.9
0.76
0.8
85.7
27.3
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
61.6
0.36
1.5
69.82
37.7

Associated Gene:

Gene:
NUBPL
Ensembl Gene ID:
ENSAPLG00000015416
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016082
20499964 - 20589023
89060