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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2059772_2061893_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2059772 - 2061893
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTATTTTAAAA
Flanking Amino Acid:
YALYGFTHCGDINECSINNG
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82
0.72
0.7
76.9
25.2
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
SCUBE2
Ensembl Gene ID:
ENSAPLG00000002698
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027922
2043826 - 2081423
37598
ENSAPLT00000002752
2044133 - 2081423
37291