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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2062017_2062477_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2062017 - 2062477
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCC
Flanking Amino Acid:
KLHWNKKDCVELKGPLPANV
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
66.6
39.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.8
0.58
0.9
74.8
34.9
Minor 5ss
37.2
-1.4
3.3
46.9
44
Minor BPS
60.8
0.32
1.7
73.08
38.7

Associated Gene:

Gene:
SCUBE2
Ensembl Gene ID:
ENSAPLG00000002698
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002752
2044133 - 2081423
37291