Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2062595_2063267_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2062595 - 2063267

Intron Length:

673

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTCTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TATGTCTTTACT

Flanking Amino Acid:

SCTSDVQVVSGTQDAYTLTC

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

73.3

37.4

Major BPS

0.6

65.6

41.1

Major PPT

66.5

0.37

65.8

Minor 5ss

34.6

-1.7

2.8

39.6

39.8

Minor BPS

63.7

0.51

1.7

80.41

41.3

Associated Gene:

Gene:

SCUBE2

Ensembl Gene ID:

ENSAPLG00000002698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002752

2044133 - 2081423

37291