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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20652313_20654260_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20652313 - 20654260
Intron Length:
1948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGATAC
5'SS Class:
major
3'SS Sequence:
TTTTAATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
GADQDLVPKIVNTLLNVKLS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.5
33.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.2
0.84
0.8
81.7
34.6
Minor 5ss
44.5
-0.6
2.8
55.6
43.4
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
DTD2
Ensembl Gene ID:
ENSAPLG00000003883
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003976
20651284 - 20654586
3303