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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2066099_2072079_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2066099 - 2072079
Intron Length:
5981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TGTTAGTGACCT
Flanking Amino Acid:
VGQIHVGNRCVSCSVGSYYD
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
73.8
0.54
1
69.1
41.8
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
44.4
-0.3
2.5
70.75
45.5

Associated Gene:

Gene:
SCUBE2
Ensembl Gene ID:
ENSAPLG00000002698
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027922
2043826 - 2081423
37598