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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2066099_2074140_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2066099 - 2074140

Intron Length:

8042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TACACTTTGAAG

Flanking Amino Acid:

VGQIHVGNRCDQCSPGEYSP

Intron Amino Acid Position:

664

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

26.1

Major BPS

0.72

78.4

31.2

Major PPT

77.9

0.63

0.7

70.1

30.9

Minor 5ss

35.2

-1.7

2.7

39.2

40.5

Minor BPS

49.8

-0.1

1.6

53.04

41.8

Associated Gene:

Gene:

SCUBE2

Ensembl Gene ID:

ENSAPLG00000002698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002752

2044133 - 2081423

37291