Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20672319_20673523_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

20672319 - 20673523

Intron Length:

1205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTATAT

U12 Branch Point Sequence:

ATATCTAGAAAC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

22.1

Major BPS

70.4

0.51

67.1

39.4

Major PPT

84.9

0.78

0.8

85.4

29.4

Minor 5ss

-2.1

3.1

39.9

46.1

Minor BPS

-0.1

1.8

61.36

36.9

Associated Gene:

Gene:

HEATR5A

Ensembl Gene ID:

ENSAPLG00000003094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044731

20662663 - 20724422

61760

ENSAPLT00000035041

20662663 - 20724947

62285