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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20679335_20679623_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20679335 - 20679623
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
SMAVRCAAAKCLLELQNEAV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.9
0.81
0.8
81.2
36.5
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760