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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20679796_20681660_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20679796 - 20681660
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
ATCTCTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCCTCTAAACA
Flanking Amino Acid:
ARALTSKQTPASTKHNFRRI
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.8
0.67
0.7
77.9
30.2
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
61.9
0.37
1.7
72.02
40.3

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760