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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20681822_20684297_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20681822 - 20684297
Intron Length:
2476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
AAATCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAAAT
Flanking Amino Acid:
SRDVRVGVTQAYVVFASTLG
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.7
0.58
1
66.3
44.1
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
59.2
0.37
1.6
76.7
40.1

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760