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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20684554_20685555_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20684554 - 20685555
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGGTC
5'SS Class:
major
3'SS Sequence:
GTATTTTTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATTTTTATCA
Flanking Amino Acid:
QAIWKLKKVVDAAMSDSNLE
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
64.3
42
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.5
0.64
1
78.2
39.8
Minor 5ss
39.4
-1.2
3.6
49.5
47.1
Minor BPS
60.2
0.32
1.6
68.32
38.1

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760