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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20692220_20692971_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20692220 - 20692971
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTGTATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATGTCTTAATA
Flanking Amino Acid:
PLPSAVDLLTQLSSICKSYG
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.3
0.59
1.1
80.1
36.7
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
67.4
0.54
1.3
70.3
36.1

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760