Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20697261_20697358_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20697261 - 20697358

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTTCTT

5'SS Class:

major

3'SS Sequence:

TTGTATCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAC

U12 Branch Point Sequence:

TTACTTGTATCT

Flanking Amino Acid:

ETDHRFIEEQLVLGNSVAGG

Intron Amino Acid Position:

637

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

1.1

74.8

41.3

Major BPS

74.7

0.62

1.1

65.7

Major PPT

83.2

0.75

0.9

77.5

36.5

Minor 5ss

39.2

-1.2

3.3

59.3

45.1

Minor BPS

46.4

-0.1

2.2

69.39

41.8

Associated Gene:

Gene:

HEATR5A

Ensembl Gene ID:

ENSAPLG00000003094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044731

20662663 - 20724422

61760

ENSAPLT00000035041

20662663 - 20724947

62285

ENSAPLT00000003210

20675402 - 20724422

49021