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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20700837_20701881_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20700837 - 20701881
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTTA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
SQDSTSPDVQAWALHSLSLI
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.5
39.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
45.7
-0.5
3.2
64.5
46.9
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760