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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20707774_20708866_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20707774 - 20708866
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGTTCTTAGTA
Flanking Amino Acid:
VKESREDFTPDINIREIGLE
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
76.9
0.61
0.9
74.8
34.8
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
66.8
0.52
1.5
74.55
37.8

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021
ENSAPLT00000044731
20662663 - 20724422
61760