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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20710035_20710753_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20710035 - 20710753
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATCTT
5'SS Class:
major
3'SS Sequence:
TTTCTGTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATTCAATAAAC
Flanking Amino Acid:
AQERKQRDSRDDFLVLHLAD
Intron Amino Acid Position:
1154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
81.4
0.71
0.8
80.7
31.3
Minor 5ss
38.4
-1.3
3.4
58.7
45.8
Minor BPS
49.9
-0
1.9
66.39
37.8

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044731
20662663 - 20724422
61760
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021