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Intron Name: Anas_platyrhynchos_platyrhynchos_5_20713258_20714505_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20713258 - 20714505

Intron Length:

1248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

AAATATATAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

ATATTTGTAAAT

Flanking Amino Acid:

ILAVLKAWAEVYIVAVEKQK

Intron Amino Acid Position:

1298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

1.1

82.6

29.8

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

59.6

0.22

1.1

52.6

44.6

Minor 5ss

32.6

-2

3.1

41.2

45.2

Minor BPS

49.7

0.06

71.8

39.2

Associated Gene:

Gene:

HEATR5A

Ensembl Gene ID:

ENSAPLG00000003094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044731

20662663 - 20724422

61760

ENSAPLT00000035041

20662663 - 20724947

62285

ENSAPLT00000003210

20675402 - 20724422

49021