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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20715430_20716221_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20715430 - 20716221
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTAGTGCG
5'SS Class:
major
3'SS Sequence:
CTTATCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTCTTATCT
Flanking Amino Acid:
VNTDRFHLILGISVEFLCSP
Intron Amino Acid Position:
1459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
61.8
43
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.62
0.9
72.1
37.8
Minor 5ss
28.9
-2.4
2.8
26.4
36
Minor BPS
73
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044731
20662663 - 20724422
61760
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021