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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20716350_20718108_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20716350 - 20718108
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTCT
5'SS Class:
major
3'SS Sequence:
TTTCTTACCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTCTTACCG
Flanking Amino Acid:
WPRSKIGGDQELGVELLNVL
Intron Amino Acid Position:
1502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
73.1
38.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.1
0.63
0.7
74.6
28.9
Minor 5ss
44.9
-0.5
3.2
65.7
45.4
Minor BPS
72.5
0.57
1.6
78.66
38.3

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044731
20662663 - 20724422
61760
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021