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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20723842_20724120_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20723842 - 20724120
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TCTGTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTATATGTAAGT
Flanking Amino Acid:
ALIATAEEEHRAHLVACLLP
Intron Amino Acid Position:
1840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
69.7
37.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78
0.63
0.9
72.1
38
Minor 5ss
42.4
-0.8
2.8
57.1
40.8
Minor BPS
45
-0.3
2.3
66.24
44.3

Associated Gene:

Gene:
HEATR5A
Ensembl Gene ID:
ENSAPLG00000003094
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044731
20662663 - 20724422
61760
ENSAPLT00000035041
20662663 - 20724947
62285
ENSAPLT00000003210
20675402 - 20724422
49021