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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20749860_20766007_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20749860 - 20766007
Intron Length:
16148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAGTAATGATTT
Flanking Amino Acid:
MSDNVDRCFETCPPRTFLPA
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84
30.2
Major BPS
76.8
0.67
1
66
40.9
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
43.2
-0.7
2.9
57.4
40.7
Minor BPS
42.8
-0.4
2
60.55
42.7

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195
ENSAPLT00000038197
20749688 - 20808882
59195