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Intron Name: Anas_platyrhynchos_platyrhynchos_5_2076540_2077733_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2076540 - 2077733

Intron Length:

1194

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

ATTGCTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTAAC

U12 Branch Point Sequence:

TTCTCCTAACCT

Flanking Amino Acid:

DGSTNITQCKNRQCGGELGD

Intron Amino Acid Position:

774

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.8

89.9

22.1

Major BPS

0.55

71.8

31.4

Major PPT

0.68

0.8

77.9

35.9

Minor 5ss

-1

2.8

51.7

39.1

Minor BPS

0.49

83.36

Associated Gene:

Gene:

SCUBE2

Ensembl Gene ID:

ENSAPLG00000002698

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027922

2043826 - 2081423

37598

ENSAPLT00000002752

2044133 - 2081423

37291