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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20770842_20770928_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20770842 - 20770928
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTAA
5'SS Class:
major
3'SS Sequence:
TCTTGTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGGAA
U12 Branch Point Sequence:
TCTTGTTTAACA
Flanking Amino Acid:
WASAFGTQEMVEFLCERGAD
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.3
29.8
Major BPS
54.5
0.11
1.4
55.4
42
Major PPT
80.5
0.69
0.9
76.7
36.2
Minor 5ss
39
-1.2
2.9
45.8
44.7
Minor BPS
70
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195