Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20772237_20773608_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20772237 - 20773608

Intron Length:

1372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAGGC

5'SS Class:

major

3'SS Sequence:

GTCTGTTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAA

U12 Branch Point Sequence:

TCTGTTTTAAAG

Flanking Amino Acid:

TFQQTMLPSIRKASLALIRK

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

66.2

38.2

Major BPS

72.1

0.55

1.2

63.7

43.9

Major PPT

70.4

0.46

1.1

70.1

39.4

Minor 5ss

30.8

-2.2

3.3

42.3

44.5

Minor BPS

55.8

0.04

1.6

59.29

43.1

Associated Gene:

Gene:

HECTD1

Ensembl Gene ID:

ENSAPLG00000002424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038197

20749688 - 20808882

59195

ENSAPLT00000029236

20749688 - 20808882

59195

ENSAPLT00000002489

20749688 - 20808882

59195