About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20775421_20778387_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20775421 - 20778387
Intron Length:
2967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
NSKGCKQVEGESRSEFLEKL
Intron Amino Acid Position:
734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.3
72.9
34.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.8
0.51
1
70.7
39.1
Minor 5ss
35.1
-1.7
2.7
37.8
41.1
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195