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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20780215_20780442_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20780215 - 20780442
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATCATAATT
Flanking Amino Acid:
SAWELHTNRQCIEGENTWRD
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
59.8
0.39
1.6
77.06
39.7

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195