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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20780590_20780947_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20780590 - 20780947
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGTATCAGAAGT
Flanking Amino Acid:
VQSLLTVLNNNIDLDVKQDC
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
82.2
25.6
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
40.8
-1
3
53.7
43.8
Minor BPS
45.7
-0.2
2
67.3
42.8

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195