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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20782264_20782708_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20782264 - 20782708
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTCTTTTTAATA
Flanking Amino Acid:
GIIYWIGTNAKTAYEWVNPA
Intron Amino Acid Position:
1085

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
86.7
22.9
Major BPS
80
0.75
1
78.6
31
Major PPT
78.8
0.65
0.8
76.6
30.6
Minor 5ss
42.4
-0.8
3
58.5
40.4
Minor BPS
68.4
0.57
1.2
69.67
37.9

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002489
20749688 - 20808882
59195
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195