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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20783033_20783491_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20783033 - 20783491
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
AACAAATTTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTCTCCCCAACG
Flanking Amino Acid:
HVDDCSLNEPGSTATWPLDP
Intron Amino Acid Position:
1193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
61.5
44.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
52.8
0.06
1.2
49.8
42
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
57.1
0.09
2
68.62
44.5

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195