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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20792744_20794890_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20792744 - 20794890
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTATTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATTA
Flanking Amino Acid:
QEDQEYEEVMEEEEYETKGG
Intron Amino Acid Position:
1706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.1
61.8
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
1
87.7
29
Minor 5ss
36.8
-1.5
3.6
51.8
47.2
Minor BPS
60.9
0.34
1.5
69.82
37.7

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195