Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20798835_20799069_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20798835 - 20799069

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

GTTCCTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

CAATCAGGAAAA

Flanking Amino Acid:

SDKEKENGKMGCWSVEHVEQ

Intron Amino Acid Position:

1851

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

77.2

37.6

Major BPS

73.5

0.59

81.3

29.9

Major PPT

74.8

0.56

0.9

69.3

36.8

Minor 5ss

-1.3

3.3

54.4

43.7

Minor BPS

39.7

-0.7

2.2

49.21

40.6

Associated Gene:

Gene:

HECTD1

Ensembl Gene ID:

ENSAPLG00000002424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038197

20749688 - 20808882

59195

ENSAPLT00000002489

20749688 - 20808882

59195