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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20799253_20799645_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20799253 - 20799645
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATA
Flanking Amino Acid:
NCSQLIAAYKDFCEHGSKSG
Intron Amino Acid Position:
1912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
74.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.7
81
24.3
Minor 5ss
42.7
-0.8
3.2
60.6
44.5
Minor BPS
64.8
0.46
1.9
80.63
34.6

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195