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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20799857_20799935_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20799857 - 20799935
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCTTTGCATT
Flanking Amino Acid:
DPYTARTAQEEGDEHPQFNF
Intron Amino Acid Position:
1982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
81.4
0.71
0.9
77.9
35.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
48.7
-0
1.8
73.39
38.1

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195