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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20802324_20803225_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20802324 - 20803225
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGTTTTAAACA
Flanking Amino Acid:
YFTCTAFGASRAIVWLQNRR
Intron Amino Acid Position:
2053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.6
0.84
0.7
81.3
36.3
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
54.7
0.14
1.6
61.9
38.7

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195