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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20803705_20803971_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20803705 - 20803971
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGTCTCTTAAAT
Flanking Amino Acid:
DDFPDDESRQVDIGGGLKPP
Intron Amino Acid Position:
2167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
71.6
0.49
1
71.6
37.2
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
71.4
0.75
1.4
83.62
36.4

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195