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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20804580_20805654_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20804580 - 20805654
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
CAGTTAGTAACT
Flanking Amino Acid:
SGPPLSIEDLGLNFQFCPSS
Intron Amino Acid Position:
2369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
46.8
-0.1
2.2
65.46
45.1

Associated Gene:

Gene:
HECTD1
Ensembl Gene ID:
ENSAPLG00000002424
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038197
20749688 - 20808882
59195
ENSAPLT00000029236
20749688 - 20808882
59195
ENSAPLT00000002489
20749688 - 20808882
59195