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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20823312_20824743_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20823312 - 20824743
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TGGTTTTGCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
CTATGTTTGACT
Flanking Amino Acid:
KNCLSRSKDQCSFIEYKDFK
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
67.8
0.4
1
61.7
44.5
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
59
0.37
1.8
75.22
42.1

Associated Gene:

Gene:
AP4S1
Ensembl Gene ID:
ENSAPLG00000001781
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001794
20821941 - 20824881
2941