Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20833216_20852433_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20833216 - 20852433

Intron Length:

19218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGGCG

5'SS Class:

major

3'SS Sequence:

TTTGTATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TTTTTTGTATTT

Flanking Amino Acid:

HWEVERAELQARIAFLQGER

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

62.3

41.3

Major BPS

0.3

62.3

30.4

Major PPT

87.8

0.85

0.8

85.4

34.1

Minor 5ss

28.5

-2.5

3.6

38.6

46.6

Minor BPS

50.7

0.1

2.2

78.46

Associated Gene:

Gene:

STRN3

Ensembl Gene ID:

ENSAPLG00000016038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017361

20832853 - 20890526

57674

ENSAPLT00000016764

20832853 - 20890526

57674

ENSAPLT00000039208

20832853 - 20890526

57674