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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_20852538_20857547_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20852538 - 20857547
Intron Length:
5010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CATGCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AATTTGTTAATT
Flanking Amino Acid:
KMLEYALKQERAKYHKLKYG
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.4
0.64
0.9
69
41.5
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
61.4
0.44
2
78.94
37.5

Associated Gene:

Gene:
STRN3
Ensembl Gene ID:
ENSAPLG00000016038
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039208
20832853 - 20890526
57674
ENSAPLT00000017361
20832853 - 20890526
57674
ENSAPLT00000016764
20832853 - 20890526
57674